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Bioedit Company bioedit software v.7.0.4.1
Bioedit Software V.7.0.4.1, supplied by Bioedit Company, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bioedit+v%2E+7%2E0%2E4%2E1/bioedit+software/10__11646_slash_phytotaxa__658__3__3-58-24-24
Average 90 stars, based on 1 article reviews
bioedit software v.7.0.4.1 - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Polymerase Chain Reaction:

Article Title: Transcriptional activity of antifungal metabolite-encoding genes phlD and hcnBC in Pseudomonas spp. using qRT-PCR.
Article Snippet: PCR primers and TaqMan probes for qRT-PCR and qPCR reactions were designed using the software BIOEDIT v. 7.0.4.1 (Hall, 1999) based on sequences from partial hcnBC, phlD, and 16S rRNA genes of Pseudomonas spp.

Article Title: Hidden diversity in Thyridaria and a new circumscription of the Thyridariaceae
Article Snippet: The resulting alignments were checked and refined using BioEdit v. 7.0.4.1 ( ).

Article Title: Persistent hamathecial threads in the <I>Nectriaceae</I>, <I>Hypocreales</I>: <I>Thyronectria</I> revisited and re-instated
Article Snippet: All alignments were produced with the server version of MAFFT (www.ebi.ac.uk/Tools/msa/mafft), checked and refined using BioEdit v. 7.0.4.1 (Hall 1999).

Article Title: Note on the genus Nemania ( Xylariaceae ) – first records and a new species of the genus from Iran
Article Snippet: All alignments were produced with the server versions of MAFFT v. 7.490 ( www.ebi.ac.uk/Tools/mafft or http://mafft.cbrc.jp/alignment/server/ ; ) and checked and refined using BioEdit v. 7.0.4.1 ( ).

Article Title: Revisiting Wolbachia supergroup typing based on WSP: spurious lineages and discordance with MLST.
Article Snippet: The obligate intracellular bacteria Wolbachia are taxonomically subdivided into eight supergroups (named A–H).. Supergroup typing of strains has been mostly based on phylogenetic inference of theWolbachia surface protein (wsp), a gene that recently has been shown to experience high rates of recombination.. This brings into question its suitability not only for microtaxonomy, but also for supergroup classification of the genus.

Article Title: Microsatellite and mitochondrial haplotype differentiation in blue mackerel (Scomber australasicus) from the western North Pacific
Article Snippet: Sequences of the mtCyt-b gene were edited and aligned using BioEdit v. 7.0.4.1 (Hall, 1999), with manual adjustment.

Article Title: Relationships among the basal lineages of Noctuidae (Lepidoptera, Noctuoidea) based on eight gene regions
Article Snippet: Submitted: 11 January 2013 Accepted: 19 April 2013 doi:10.1111/zsc.12022 Zahiri, R., Lafontaine, J.D., Schmidt, C., Holloway, J.D., Kitching, I.J., Mutanen, M., Wahlberg, N. (2013).. Relationships among the basal lineages of Noctuidae (Lepidoptera, Noctuoidea) based on eight gene regions.. —Zoologica Scripta, 42, 488–507.

Quantitative RT-PCR:

Article Title: Transcriptional activity of antifungal metabolite-encoding genes phlD and hcnBC in Pseudomonas spp. using qRT-PCR.
Article Snippet: PCR primers and TaqMan probes for qRT-PCR and qPCR reactions were designed using the software BIOEDIT v. 7.0.4.1 (Hall, 1999) based on sequences from partial hcnBC, phlD, and 16S rRNA genes of Pseudomonas spp.

Article Title: Hidden diversity in Thyridaria and a new circumscription of the Thyridariaceae
Article Snippet: The resulting alignments were checked and refined using BioEdit v. 7.0.4.1 ( ).

Article Title: Persistent hamathecial threads in the <I>Nectriaceae</I>, <I>Hypocreales</I>: <I>Thyronectria</I> revisited and re-instated
Article Snippet: All alignments were produced with the server version of MAFFT (www.ebi.ac.uk/Tools/msa/mafft), checked and refined using BioEdit v. 7.0.4.1 (Hall 1999).

Article Title: Note on the genus Nemania ( Xylariaceae ) – first records and a new species of the genus from Iran
Article Snippet: All alignments were produced with the server versions of MAFFT v. 7.490 ( www.ebi.ac.uk/Tools/mafft or http://mafft.cbrc.jp/alignment/server/ ; ) and checked and refined using BioEdit v. 7.0.4.1 ( ).

Article Title: Revisiting Wolbachia supergroup typing based on WSP: spurious lineages and discordance with MLST.
Article Snippet: The obligate intracellular bacteria Wolbachia are taxonomically subdivided into eight supergroups (named A–H).. Supergroup typing of strains has been mostly based on phylogenetic inference of theWolbachia surface protein (wsp), a gene that recently has been shown to experience high rates of recombination.. This brings into question its suitability not only for microtaxonomy, but also for supergroup classification of the genus.

Article Title: Microsatellite and mitochondrial haplotype differentiation in blue mackerel (Scomber australasicus) from the western North Pacific
Article Snippet: Sequences of the mtCyt-b gene were edited and aligned using BioEdit v. 7.0.4.1 (Hall, 1999), with manual adjustment.

Article Title: Relationships among the basal lineages of Noctuidae (Lepidoptera, Noctuoidea) based on eight gene regions
Article Snippet: Submitted: 11 January 2013 Accepted: 19 April 2013 doi:10.1111/zsc.12022 Zahiri, R., Lafontaine, J.D., Schmidt, C., Holloway, J.D., Kitching, I.J., Mutanen, M., Wahlberg, N. (2013).. Relationships among the basal lineages of Noctuidae (Lepidoptera, Noctuoidea) based on eight gene regions.. —Zoologica Scripta, 42, 488–507.

Real-time Polymerase Chain Reaction:

Article Title: Transcriptional activity of antifungal metabolite-encoding genes phlD and hcnBC in Pseudomonas spp. using qRT-PCR.
Article Snippet: PCR primers and TaqMan probes for qRT-PCR and qPCR reactions were designed using the software BIOEDIT v. 7.0.4.1 (Hall, 1999) based on sequences from partial hcnBC, phlD, and 16S rRNA genes of Pseudomonas spp.

Article Title: Hidden diversity in Thyridaria and a new circumscription of the Thyridariaceae
Article Snippet: The resulting alignments were checked and refined using BioEdit v. 7.0.4.1 ( ).

Article Title: Persistent hamathecial threads in the <I>Nectriaceae</I>, <I>Hypocreales</I>: <I>Thyronectria</I> revisited and re-instated
Article Snippet: All alignments were produced with the server version of MAFFT (www.ebi.ac.uk/Tools/msa/mafft), checked and refined using BioEdit v. 7.0.4.1 (Hall 1999).

Article Title: Note on the genus Nemania ( Xylariaceae ) – first records and a new species of the genus from Iran
Article Snippet: All alignments were produced with the server versions of MAFFT v. 7.490 ( www.ebi.ac.uk/Tools/mafft or http://mafft.cbrc.jp/alignment/server/ ; ) and checked and refined using BioEdit v. 7.0.4.1 ( ).

Article Title: Revisiting Wolbachia supergroup typing based on WSP: spurious lineages and discordance with MLST.
Article Snippet: The obligate intracellular bacteria Wolbachia are taxonomically subdivided into eight supergroups (named A–H).. Supergroup typing of strains has been mostly based on phylogenetic inference of theWolbachia surface protein (wsp), a gene that recently has been shown to experience high rates of recombination.. This brings into question its suitability not only for microtaxonomy, but also for supergroup classification of the genus.

Article Title: Microsatellite and mitochondrial haplotype differentiation in blue mackerel (Scomber australasicus) from the western North Pacific
Article Snippet: Sequences of the mtCyt-b gene were edited and aligned using BioEdit v. 7.0.4.1 (Hall, 1999), with manual adjustment.

Article Title: Relationships among the basal lineages of Noctuidae (Lepidoptera, Noctuoidea) based on eight gene regions
Article Snippet: Submitted: 11 January 2013 Accepted: 19 April 2013 doi:10.1111/zsc.12022 Zahiri, R., Lafontaine, J.D., Schmidt, C., Holloway, J.D., Kitching, I.J., Mutanen, M., Wahlberg, N. (2013).. Relationships among the basal lineages of Noctuidae (Lepidoptera, Noctuoidea) based on eight gene regions.. —Zoologica Scripta, 42, 488–507.

Software:

Article Title: Transcriptional activity of antifungal metabolite-encoding genes phlD and hcnBC in Pseudomonas spp. using qRT-PCR.
Article Snippet: PCR primers and TaqMan probes for qRT-PCR and qPCR reactions were designed using the software BIOEDIT v. 7.0.4.1 (Hall, 1999) based on sequences from partial hcnBC, phlD, and 16S rRNA genes of Pseudomonas spp.

Article Title: Hidden diversity in Thyridaria and a new circumscription of the Thyridariaceae
Article Snippet: The resulting alignments were checked and refined using BioEdit v. 7.0.4.1 ( ).

Article Title: Persistent hamathecial threads in the <I>Nectriaceae</I>, <I>Hypocreales</I>: <I>Thyronectria</I> revisited and re-instated
Article Snippet: All alignments were produced with the server version of MAFFT (www.ebi.ac.uk/Tools/msa/mafft), checked and refined using BioEdit v. 7.0.4.1 (Hall 1999).

Article Title: Note on the genus Nemania ( Xylariaceae ) – first records and a new species of the genus from Iran
Article Snippet: All alignments were produced with the server versions of MAFFT v. 7.490 ( www.ebi.ac.uk/Tools/mafft or http://mafft.cbrc.jp/alignment/server/ ; ) and checked and refined using BioEdit v. 7.0.4.1 ( ).

Article Title: Revisiting Wolbachia supergroup typing based on WSP: spurious lineages and discordance with MLST.
Article Snippet: The obligate intracellular bacteria Wolbachia are taxonomically subdivided into eight supergroups (named A–H).. Supergroup typing of strains has been mostly based on phylogenetic inference of theWolbachia surface protein (wsp), a gene that recently has been shown to experience high rates of recombination.. This brings into question its suitability not only for microtaxonomy, but also for supergroup classification of the genus.

Article Title: Microsatellite and mitochondrial haplotype differentiation in blue mackerel (Scomber australasicus) from the western North Pacific
Article Snippet: Sequences of the mtCyt-b gene were edited and aligned using BioEdit v. 7.0.4.1 (Hall, 1999), with manual adjustment.

Article Title: Relationships among the basal lineages of Noctuidae (Lepidoptera, Noctuoidea) based on eight gene regions
Article Snippet: Submitted: 11 January 2013 Accepted: 19 April 2013 doi:10.1111/zsc.12022 Zahiri, R., Lafontaine, J.D., Schmidt, C., Holloway, J.D., Kitching, I.J., Mutanen, M., Wahlberg, N. (2013).. Relationships among the basal lineages of Noctuidae (Lepidoptera, Noctuoidea) based on eight gene regions.. —Zoologica Scripta, 42, 488–507.



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